| March 25-27 2009 |
| The 3rd Paris Workshop on Genomic Epidemiology |
| Day 1 - 25. March 2009 | |||
| Session 1: From 2nd to 3rd Generation DNA Sequencing | |||
| 9:00-9:30 | Introduction to DNA analysis | Ivo Gut | Evry |
| 9:30-10:00 | Cancer transcriptome sequencing | Martin Hirst | Vancouver |
| 10:00-10:30 | Application of 2nd Generation DNA sequencing – ChIP-seq | Michel Werner | Saclay |
| 10:30-10:45 | The Illumina Genome Analyzer | Richard Henfrey | Illumina |
| 10:45-11:00 | SOLiD 3 System, and beyond | Raimo Tanzi | Applied Biosystems |
| 11:00-11:30 | Coffee Break | ||
| 11:30-12:00 | Integrating small RNA and epigenomic data: lessons from Arabidopsis | Vincent Colot | Paris |
| 12:00-12:30 | DNA methylation analysis | Jörg Tost | Evry |
| 12:30-12:45 | The Roche FLX system | Eric Baud | Roche |
| 12:45-14:00 | Lunch | ||
| 14:00-14:30 | Single molecule DNA analysis | Mats Nilsson | Uppsala |
| 14:30-15:00 | Nanopore sequencing | Hagan Bayley | Oxford |
| 15:00-15:30 | Rat genetics | Norbert Hübner | Berlin |
| 15:30-15:45 | |||
| 15:45-16:00 | Integrated Fluidic Circuits for Next-Generation Genomics | Bob Jones | Fluidigm |
| 16:00-16:30 | Coffee Break | ||
| Session 2: Protein and Metabolite analysis | |||
| 16:30-17:00 | Discovery proteomics | Hanno Langen | Basel |
| 17:00-17:30 | Human Proteome Atlas | Fredrik Ponten | Uppsala |
| Day 2 - 26. March 2009 | |||
| Session 3: Sample Collection and Storage | |||
| 9:00-9:30 | Standardisation of sample collection | Tim Peakman | Manchester |
| 9:30-10:00 | Helmholtz cohort project | Erich Wichmann | Munich |
| 10:00-10:15 | New technologies for HT-singleplex SNP Genotyping, NextGen DNA shearing and High Volume e(mulsion)PCR | Niels Kruize | KBiosciences |
| 10:15-10:45 | Data warehousing | Alvis Brazma | EBI |
| 10:45-11:00 | Some examples where nucleic acid mass spectrometry outperforms other genetic epidemiological tools | Charles Cantor | Sequenom |
| 11:00-11:30 | Coffee Break | ||
| Session 4: Genetic studies of disease | |||
| 11:30-12:00 | Type 2 Diabetes | Mark McCarthy | Oxford |
| 12:00-12:30 | Asthma | Bill Cookson | London |
| 12:30-12:45 | New tools for advanced DNA methylation analysis | Elizabeth Homer | Qiagen |
| 12:45-14:00 | Lunch | ||
| 14:00-14:30 | Alzheimer's disease | Philippe Amouyel | Lille |
| 14:30-15:00 | Autism | Thomas Bourgeron | Paris |
| 15:00-15:30 | Stem cells as a tool to study spinal motor neuron development and disease | Hynek Wichterle | New York |
| 15:30-16:00 | Blood pressure | Patricia Munroe | London |
| 16:00-16:30 | Coffee Break | ||
| Session 5: Data Analysis and Interpretation | |||
| 16:30-17:00 | Following up Genomewide Association Studies: Prospects for fine-mapping and resequencing studies | Gonçalo Abecassis | Michigan |
| 17:00-17:15 | RNAcompete: a new method for systematic analysis of RNA-binding specificities | Tim Hughes | Toronto |
| 17:15-17:30 | A workflow for parallel analysis of genome-wide data sets | Liisa Koivukoski | Espoo |
| 17:30-17:45 | Genome-wide association study on early-onset bipolar disorder | Stephane Jamain | Creteil |
| Day 3 - 27. March 2009 | |||
| 9:00-9:30 | On the use of functional gene modules in genomics |
Joaquin Dopazo | Valencia |
| 9:30-10:00 | The Operon Database System | Mario Foglio | Evry |
| 10:00-10:15 | Multiplex PCR as a tool for human diagnostics | Lotte Moens | Antwerp |
| 10:15-10:30 | Matrix metalloproteinases 1 and 3 polymorphisms in the prognosis of head and neck cancer | Victor Wünsch-Filho | São Paulo |
| 10:30-11:00 | Statistical methods for the analysis of spectra arising from metabonomic and proteomic studies within genomic epidemiology | Chris Holmes | Oxford |
| 11:00-11:30 | Coffee Break | ||
| 11:30-12:00 | Statistical methods II: Multi-locus association analyses | Jürg Ott | Beijing |
| 12:00-12:30 | Statistical methods III | Simon Heath | Evry |
| 12:30-12:45 | Using a Bayesian approach to combine evidence for maternal and imprinting effects from multiple studies | Beate Glaser | Bristol |
| 12:45-14:00 | Lunch | ||
| 14:00-14:30 | Estimation of Genotype Relative Risks from Pedigree Data | Dan Schaid | Rochester |
| 14:30-15:00 | Statistical methods V | Peter Kraft | Boston |
| 15:00-15:15 | Effect of 17q variants and smoking exposure in early-onset asthma | Emmanuelle Bouzigon | Paris |
| 15:15-15:45 | Associated genetic variants and personalized medicine | Dan Weeks | Pittsburgh |
| 15:45-16:00 | Close | ||